Results for "Samtools"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...un - BioPerl wrappers: scriptslibbio-perl-perl - BioPerl core perl moduleslibbio-perl-run-perl - BioPerl wrappers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglib...3941 days ago
Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does th...ithub.com/gringer/bioinfscripts/blob/master/vcf2fq.pl https://github.com/lh3/samtools/blob/master/bcftools/vcfutils...2107 days ago
Frequently used bioinformatics tools for viral genome analysis !
...notation Transfer Tool. Otto, T. D., Dillon, G. P., Degrave, W. S. & Berriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H. et al. Bioinformatics...1038 days ago
Illumina based assembly pipeline steps !
...Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence removal (iV...Duplicate read marking (picard; optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon co...868 days ago
