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Results for "Trim"

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• • Jit@jit.aber

  

  Trimmomatic: A flexible read trimming tool for Illumina NGS data

  Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 ...

  Tags: Bioinformatics, Trim, NGS, Illumina, Reads, Trimmomatic

  2934 days ago

• • Jit@jit.aber

  

  #Sickle ( https://github.com/najoshi/sickle ) to #trim #reads using a 20-Phred quality threshold

  Tags: Sickle, trim, reads

  2482 days ago

• • Jit@jit.aber

  

  nanofilt: Filtering and trimming of long read sequencing data

  Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and mapping https://github.com/wdecoster/nanofilt

  Tags: nanofilt, filter, trim, long, read, sequencing, NGS, nanopore

  2097 days ago