BOL: nanofilt: Filtering and trimming of long read sequencing data

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nanofilt: Filtering and trimming of long read sequencing data

nanofilt: Filtering and trimming of long read sequencing data

By Jit 2338 days ago Comments (1)

https://github.com/wdecoster/nanofilt

Filtering on quality and/or read length, and optional trimming after passing filters.
Reads from stdin, writes to stdout.

Intended to be used:

directly after fastq extraction
prior to mapping
in a stream between extraction and mapping

https://github.com/wdecoster/nanofilt

Comments

- Rahul Nayak@rahul
Rahul Nayak 2272 days ago
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/