Jit
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nanofilt: Filtering and trimming of long read sequencing data
By Jit 2098 days ago Comments (1)
https://github.com/wdecoster/nanofilt
Filtering on quality and/or read length, and optional trimming after passing filters.
Reads from stdin, writes to stdout.
Intended to be used:
- directly after fastq extraction
- prior to mapping
- in a stream between extraction and mapping
Comments
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/