Results for "Unicycler"
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List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1) CANU (v. 1.6) Unicycler (v. v0.4.1) Miniasm (v....1921 days ago
Illumina based assembly pipeline steps !
...ants across callers (BCFTools) De novo assembly Primer trimming (Cutadapt; amplicon data only) Choice of multiple assembly tools (SPAdes || Unicycler || minia) Blast to referen...868 days ago
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Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly...2359 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. For...1216 days ago
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Bioinformatics tools for genome assembly !
...those from PacBio or Nanopore. Minia: An assembler optimized for low memory consumption, suitable for small and medium-sized genomes. Unicycler: A hybrid assembler that comb...277 days ago
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Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible asse...Tags: Unicycler, Hybrid, assembly, pipeline, bacterial, genomes
2359 days ago
