Results for "distance"

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  • Andi

    This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial g...

    Tags: Bioinformatics, NGS, Sequence, Andi, Evolution, Distance, Tool

    621 days ago

  • Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html

    Tags: patristic, distance, species

    169 days ago

  • Edit distance application in bioinformatics !

    There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau–Levenshtein distance allows insertion, deletion, substitution, and the transposition of two adjacent characters; ...

    Tags: Edit, distance, application, bioinformatics

    48 days ago

  • Mash: fast genome and metagenome distance estimation using MinHash

    Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10....

    Tags: Mash, fast, genome, metagenome, distance, estimation, MinHash

    42 days ago