Results for "miniasm"
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Comment on "Run miniasm assembler on nanopore reads !"
...fastq \ | gzip -1 > ./minimap.paf.gz miniasm -f \ ../../trimming_practica...nofilt_trimmed.fastq \ ./minimap.paf.gz > miniasm.gfa awk ’/^S...dnadiff ~/course_data/precompiled/chr17.fasta miniasm.fasta...787 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...> 20170911_minimap2_pacbio_oly.paf 2 Run miniasm: This uses your concatenated FASTQ file and the PAF file output from the miniasm step. The code below is taken...5). minimap2 \ -t 23 \ 20170918_oly_pacbio_miniasm_reads.fasta 20170905_minimap2...2158 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...ed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) m...reads.fq | gzip -1 > reads.paf.gz Then we can assemble miniasm -f reads.fq reads.paf.gz >...2166 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...main] CMD: minimap2 -xava-ont -t20 -X both.fastq both.fastq[M::main] Real time: 3608.342 sec; CPU: 67037.124 securbe@urbo214b[allONT] ~/Tools/miniasm/miniasm -f both.fastq AONT.paf > A...2272 days ago
