CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...owing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutioniz...2467 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...on of CHSs. Results Here we present a Java software CHSMiner that detects CHSs based on shared gene content alone. It implements fast greedy search algorithm and rigorous statis...2351 days ago
2340 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...T is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant ac...dware devices. PLAST stands for Parallel Local Sequence Alignment Search Tool and is was pub...2338 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
...ale experimental studies of transcriptional regulations. To efficiently search for regulatory relationships...972 (59.8%) regulatory relationships are known for mode of regulation. Search at : http://www.grnpedia...2318 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https:...2298 days ago
HTTDB - Horizontally transferred transposable elements database
...e developed the HTT database to keep an updated repository of HTT events in all eukaryotes, allowing not only TE specialists to add new events and search the database, but also non-sp...2285 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...he input-box by selecting the type of identifier and pasting identifiers (one per line) or by using the gene ID search tool or with the BLAST search tool Click "Visualize co...2279 days ago
Circoletto: visualizing sequence similarity with Circos
...letto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and...2268 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence...same sensitivity. It can perform profile searches with the same sensitivity a...seqs2 enables sensitive protein sequence searching for the analysis of massiv...2227 days ago