Results for "syntenic"
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...ation aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic relationships between genomes...2766 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with th...2625 days ago
AVID: A Global Alignment Program
...mic regions up to megabases long. We present numerous applications of the method, ranging from the comparison of assemblies to alignment of large syntenic genomic regions and whole gen...2530 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...(i) construct synteny blocks among multiple species by using prebuilt alignments in the UCSC genome browser database, (ii) visualize and download syntenic relationships as high-quality...2529 days ago
- Typically in comparative genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a common descent. However, when comparing two gen...
2462 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...executed via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (CSBs) - groups of gen...2011 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...his can be an issue for downstream analysis whether you're working on the haploid or phased-diploid assembly. Identify pairs of contigs that are syntenic and move one of them to the h...1958 days ago
- ...differences in the sequences, which are distinguished for residing in syntenic or rearranged regions. This d...important as rearranged regions are inherited differently compared to syntenic regions. https://genomebiolo...
1546 days ago
Synteny and Rearrangement Identifier (SyRI)
..., and these alignments are then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linea...s, and duplications), local variations (SNPs, indels, CNVs etc) within syntenic and structural rearrangements...1452 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple gen...1438 days ago
