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• • Nadia Baig@Nadia

  

  Nadia Baig is now a friend with Hardeep Kaur 2946 days ago

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• • Hardeep Kaur@hardeep

  

  Hardeep Kaur is now a friend with Nadia Baig 2946 days ago

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• • pradyumna Jayaram@pradyumnasagar

  

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  Nadia Baig is now a friend with Anjana 2946 days ago

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• • Nadia Baig@Nadia

  

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• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh commented on a bookmark Genome Assembly Tutorial 2946 days ago

  This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh bookmarked Genome Assembly Tutorial 2946 days ago

  If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes often have long repetitive regions, and they are hard...

  http://www.homolog.us/Tutorials/index.php?p=1.4&s=1

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  • • Abhimanyu Singh@abhimanyu

    

    Abhimanyu Singh 2946 days ago

    This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh created a new bio-script DotPlot with Perl 2946 days ago
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh created a new bio-script DotPlot with Perl GD 2946 days ago
• • Jitendra Narayan@admin

  

  Jitendra Narayan posted a new ad in the ResearchLabs Venkatesh Lab 2946 days ago
• • Jit@jit.aber

  

  Jit created a page Genome Assembly Tools and Software - PART1 !! 2946 days ago

  The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short reads is usually highly memory-intensive, only a few assemblers, best suited for...
• • Bulbul@bulbul

  

  Bulbul bookmarked pyScaf 2947 days ago

  pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synteny to the genome of some related species (reference-based...

  https://github.com/lpryszcz/pyScaf
• • Bulbul@bulbul

  

  Bulbul bookmarked LAST 2947 days ago

  LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA...

  http://last.cbrc.jp/
• • Bulbul@bulbul

  

  Bulbul posted to the wire 2947 days ago

  Comparative Genomics Study of #Multi-Drug-Resistance #Mechanisms in the #Antibiotic-Resistant Streptococcus suis R61 Strain https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180280/
• • Bulbul@bulbul

  

  Bulbul posted to the wire 2947 days ago

  Interesting plotting https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0678-1 #Plot #Structure #Variation #Cotton
• • Bulbul@bulbul

  

  Bulbul commented on the blog Structural variation: the hidden genomic treasure 2947 days ago

  This research paper is also useful http://www.sciencedirect.com/science/article/pii/S1046202316300184
• • Jit@jit.aber

  

  Jit bookmarked quickmerge: A simple and fast metassembler and assembly gap filler designed for long molecule based... 2947 days ago

  quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assemblies made with illumina short reads and PacBio long reads to improve...

  https://github.com/mahulchak/quickmerge
• • Jit@jit.aber

  

  Jit bookmarked MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs 2947 days ago

  MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs of any...

  https://github.com/LANL-Bioinformatics/MeGAMerge

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