The link provided by Poonam is certainly useful, but mostly outdated. I will suggest you to please try University of Freiburg for master degree courses.
Cheers
I suggest you study Bioinformatics program in TUM Munich , it is so far best institute for learning bioinformatics deeply:
https://www.in.tum.de/en/for-prospective-students/masters-programs/bioinformatics.html
https://www.in.tum.de/en/for-prospective-students/masters-programs/bioinformatics/curriculum.html
You can search more in this page:
https://www.daad.de/deutschland/studienangebote/studiengang/en/
Hi Manas,
May I request you to please have a look at Rahul pages have http://bioinformaticsonline.com/pages/view/2560/great-place-to-study-bioinformatics-in-europe
Hope useful.
Cheers