I am looking for new, interactive and user friendly tools to see chromosomal rearrangements. I tried IGV, but it does not seems to be very helpful for chromosomal rearrangements visualization. Circos look pretty useless, as it does not allow me to explore well. Help Please...
Yes you are right at some extend :|
You should check this paper, http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-204 it provide a comparative table of all the available genome/chromosome visualization tools. Hope few of them would be useful.