[WARNING] For a multi-part index, no @SQ lines will be outputted.
How to resolve it.
Answers
0
Well such error appear only when you flip "reference.fa" with "reads.fa/fq". It should always be reference.fa first and then reads.fa in the commandline of minimap2.
Well such error appear only when you flip "reference.fa" with "reads.fa/fq". It should always be reference.fa first and then reads.fa in the commandline of minimap2.
More at https://github.com/lh3/minimap2/issues/58