BOL

10 PhD positions in Poland http://www.wb.uj.edu.pl/en_GB/studia/phd-biology/recruitment #Poland #PhD

Convert 2bit to psl $ blat myAssembly.2bit -oneOff=0 -noHead myQueryContigSeqs.fa myHits.psl #Convert #psl #2bit #blat

Convert fasta to 2bit $ faToTwoBit myAssembly.fa myAssembly.2bit #Fasta #2bit #Convert

https://www.ncbi.nlm.nih.gov/Class/NAWBIS/Modules/Phylogenetics/phylo12.html #P-distance #Distance #Calculation #Sequences #Align

Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

Remove duplicate fasta ids: awk '/^>/{f=!d[$1];d[$1]=1}f' in.fa > out.fa #duplicate #fasta #ids

Bioinformatics faculty WalkIn https://www.pdkv.ac.in/Recruitment/wii-teachervncab-040717.pdf #WalkIn #Bioinformatics

WalkIn for Bioinformatics at CIFRI http://www.cifri.res.in/wknintrwv1.pdf #CIFRI #WalkIn

Bootstrapping with R http://www.burns-stat.com/documents/tutorials/the-statistical-bootstrap-and-other-resampling-methods-2/

https://github.com/institut-de-genomique/NaS #Assembly

BLAST cheats heat http://www.vicbioinformatics.com/documents/Quick_Start_Guide_BLAST_to_BLAST+.pdf #BLAST #NCBI #Cheat

DiscovarDenovo assembly ppt https://banana-slug.soe.ucsc.edu/_media/team_5_report_1.pdf #PPT #Assembly #Help #Steps

Gaze for gene prediction http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186661/ # Genes #Predictions #Genome #Tools #Gaze

Replace space with tab: perl -lpe 's/\s/\t/g' < trf_file.dat > outfile.txt #TRF #Tab #Space #Replace #Perl #PerlTrick #PerlOneliner

#Hierarchical cluster analysis http://www.econ.upf.edu/~michael/stanford/maeb7.pdf