BOL

Hi Tayyiba,

Sorry, you did not explain you question well. I guess your are looking for Alternative splicing and functional prediction analysis tool/script.

You can use "AltAnalyze" which is a freely available, open-source and cross-platform program. Please find the source code at  http://code.google.com/p/altanalyze/

http://code.google.com/p/altanalyze/wiki/SetPythonPATH

For visualizing alternative splicing and the effects of splicing quantitative trait loci, you can use or SplicePlot http://montgomerylab.stanford.edu/spliceplot/

Thanks

If you are looking for any online tool then try Alternative Splice Site Predictor (ASSP) which predicts putative alternative exon isoform, cryptic, and constitutive splice sites of internal (coding) exons. http://wangcomputing.com/assp/index.html

There are several other tools available for such purposes, please visit http://www.phenosystems.com/www/index.php/links-to-various-tools-and-information/splice-prediction-tools