Watch out: only a few files are counted in coverage statistics.
Full documentation on Read the Docs.
A set of tools for viral metagenomics.
virmet is called with a command subcommand syntax: virmet fetch --viral n, for example, downloads the bacterial database. Other available subcommands so far are
fetch download genomesupdate update viral/bacterial databaseindex index genomeswolfpack analyze a Miseq runcovplot plot coverage for a specific organismA short help is obtained with virmet subcommand -h.
