BOL

Linux command cheatsheet https://www.xmind.net/m/WwtB/#

sed -i 's/2019/2020/g' test.txt test2.txt test3.txt #Find #Replace #sed

Bioinformatics opening at #NIBMG https://www.nibmg.ac.in/uploads/userfiles/files/Assistant_Professor_156(3).pdf

Updated #prokaryotic representative #genomes collection includes 685 new species! https://ncbiinsights.ncbi.nlm.nih.gov/2022/02/07/updated_prok-rep-assemblies-2/

Bioinformatics PhD position at https://evotecgroup.wd3.myworkdayjobs.com/en-US/Evotec_Career_Site/job/Toulouse/Bioinformatics-Scientist-RNA-PhD-Level--F-M-_REQ-03521

#CoViD #miner #tools https://translational-medicine.biomedcentral.com/articles/10.1186/s12967-020-02675-4

#NLP-MeTaxa: A Natural Language Processing Approach for #Metagenomic #Taxonomic #Binning Based on Deep Learning https://github.com/padriba/NLP_MeTaxa/

Understanding Covid variant https://sangerinstitute.blog/2021/06/29/covid-connections-variant-or-villain/ #Covid #Variant #Disease #SARS-Cov2

#Ten simple #rules for organizing a #bioinformatics #training #course in low- and #middle-income countries https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009218

Whole genome alignment https://pdfs.semanticscholar.org/f64b/68973f1e836e1fcf697de709c3ffb1225ce5.pdf #Whole #Genome #Alignment #PPT

Evolutionary evidence of chromosomal rearrangements through SNAP https://www.diva-portal.org/smash/get/diva2:1580925/FULLTEXT01.pdf #Bioinformatics #Computational

https://www.sciencemag.org/news/2021/08/new-sars-cov-2-variants-have-changed-pandemic-what-will-virus-do-next? #Pandemic #Variants

#Convert #FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta

Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta #Multi-fasta #fasta #multi #genome #files

install PAR::Packer in unbuntu. $ sudo apt-get install libpar-packer-perl #pp #Perl #Ubuntu