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  • Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from...

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads

https://github.com/ruping/Breakpointer

Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more complex structural variants(SVs).