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LSC: Improving PacBio Long Read Accuracy by Short Read Alignment

https://www.healthcare.uiowa.edu/labs/au/LSC/
  • Added Command line argument support.
  • Multi-stage execution modes.
  • Support for parallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N.
  • Better compressed intermediate files.
  • Added utilities folder.
  • Added support for multiple short read files.
  • Removed use of configuration file.