Rahul Nayak
A Bioinformatician
Our Sponsors
RapClust: Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
By Rahul Nayak 2240 days ago
https://github.com/COMBINE-lab/RapClust
RapClust is a tool for clustering contigs from de novo transcriptome assemblies. RapClust is designed to be run downstream of the Sailfish or Salmon tools for rapid transcript-level quantification. Specifically, RapClust relies on the fragment equivalence classes computed by these tools in order to determine how seqeunce is shared across the transcriptome, and how reads map to potentially-related contigs across different conditions.
