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  • SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation

SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation

https://bioinf.shenwei.me/seqkit/usage/

FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filtering, deduplication, splitting, shuffling, and sampling. Existing tools only implement some of these manipulations, and not particularly efficiently, and some are only available for certain operating systems. Furthermore, the complicated installation process of required packages and running environments can render these programs less user friendly.