MFannot is a program for the annotation of mitochondrial and plastid genomes
MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools.
It makes intense use of RNA/intron detection tools including HMMER, Exonerate, Erpin and others.
http://megasun.bch.umontreal.ca/cgi-bin/mfannot/mfannotInterface.pl