Jit
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VG: variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
By Jit 1771 days ago
https://github.com/vgteam/vg
Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:
- nodes, which are labeled by sequences and ids
- edges, which connect two nodes via either of their respective ends
- paths, describe genomes, sequence alignments, and annotations (such as gene models and transcripts) as walks through nodes connected by edges
