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  • gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

https://github.com/kammoji/gapFinisher

gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/