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GenomeTools: The versatile open source genome analysis software

http://genometools.org/

The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.

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If you are interested in gene prediction, have a look at GenomeThreader.

http://genometools.org/pub/