X BOL wishing you a very and Happy New year

Alternative content

Our Sponsors



Download BioinformaticsOnline(BOL) Apps in your chrome browser.




  • Bookmarks
  • Rahul Nayak
  • kebabs: package provides functionality for kernel based analysis of biological sequences via...

kebabs: package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods

http://www.bioinf.jku.at/software/kebabs/

The kebabs package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods. Biological sequences include DNA, RNA, and amino acid (AA) sequences. Sequence kernels define similarity measures between sequences. The package implements some of the most important kernels for sequence analysis in a very flexible and efficient way and extends the standard position-independent functionality of these kernels in a novel way to take the position of patterns in the sequences into account for the similarity measure.

http://www.bioinf.jku.at/software/kebabs/

http://bioconductor.org/packages/release/bioc/vignettes/kebabs/inst/doc/kebabs.pdf