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  • MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer...

MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (v4) to detect variants.

https://github.com/SAMtoBAM/MUMandCo

MUM&Co is able to detect:
Deletions, insertions, tandem duplications and tandem contractions (>=50bp & <=150kb)
Inversions (>=1kb) and translocations (>=10kb)