A lesson introducing the Snakemake workflow system for bioinformatics analysis.
Prerequisites
This is an intermediate lesson and assumes learners have already done some bioinformatics:
- Familiarity with the BASH command shell, including concepts like pipes, variables and loops.
- Knowledge of bioinformatics fundamentals like the FASTQ file format and transcriptome sequencing, in order to understand the example workflow.
No previous knowledge of Snakemake or workflow systems is required.
https://carpentries-incubator.github.io/snakemake-novice-bioinformatics/index.html
