BOL: Group activity

Group activity

- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4008 days ago

Approximate Matching with Suffix Trees http://homepage.usask.ca/~ctl271/810/approximate_matching.shtml
- Aaryan Lokwani@aaryan
Aaryan Lokwani commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4019 days ago

Implementing Hidden Markov Models(HMM) for Information Extraction in Perl http://www.lwebzem.com/cgi-bin/res/HMM.html
- Surajeet@surajeet
Surajeet commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4022 days ago

Soft Computing Methodologies in Bioinformatics http://pdf.aminer.org/000/305/056/positive_and_negative_combination_effects_of_crossover_and_mutation_operators.pdf
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4022 days ago

Applications of artiﬁcial intelligence in bioinformatics : A review Zoheir Ezziane http://www.csis.pace.edu/~ctappert/dps/d861-07/team2-AI.pdf
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4022 days ago

Biological Sequence Matching using Boolean algebra vs. Fuzzy Logic http://www.ijcaonline.org/volume26/number11/pxc3874383.pdf
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4023 days ago

A Quantum Algorithm for Closest Pattern Matching http://sqig.math.ist.utl.pt/pub/MateusP/05-MO-quantlog05s.pdf
- Manisha Mishra@manisha
Manisha Mishra commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4024 days ago

Graph Theory and Networks in Biology by Oliver Mason and Mark Verwoerd http://www.hamilton.ie/systemsbiology/files/2006/graph_theory_and_networks_in_biology.pdf
- Manisha Mishra@manisha
Manisha Mishra commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4024 days ago

Efﬁcient Systems Biology Algorithms for Biological Networks over Multiple Time-Scales: From Evolutionary to Regulatory Time http://cs.nyu.edu/mishra/PEOPLE/mitrofanova_antonina.pdf
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4026 days ago

Original paper of Basic local alignment search tool algorithms http://www.cmu.edu/bio/education/courses/03510/LectureNotes/Altschul1990.pdf
- Shikha Logwani@shikha
Shikha Logwani commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4026 days ago

Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with source-codes http://bioinformaticsonline.com/pages/view/6380/hidden-markov-models-viterbi-algorithm-markov-chain-exploration-with-script
- Poonam Mahapatra@poonam
Poonam Mahapatra commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4026 days ago

A Fast Recursive Algorithm for Optimum Sequential Signal Detection in a BLAST System http://externe.emt.inrs.ca/users/benesty/papers/sp_jul2003.pdf
- Manisha Mishra@manisha
Manisha Mishra created a page Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script 4027 days ago

Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 bases) in which the frequency of the CG sequence is higher than other regions. It is also called the CpG...
Comments
- Aaryan Lokwani@aaryan
  
  Aaryan Lokwani 4007 days ago
  Thanks for this links, really informative.
- Madhvan Reddy@madhvan
  
  Madhvan Reddy 3994 days ago
  Playing with the codes is my favourite hobby, will try this. Thanks for sharing useful algorithms links.
- Surajeet@surajeet
Surajeet commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4029 days ago

Bioinformatics Algorithms: Dynamic Programming by David Hoksza http://siret.ms.mff.cuni.cz/hoksza/teaching/vscht/bioinfoalgo/2012/presentations/lecture02.pdf Bioinformatics Algorithms Book @...
- Kamalakshi Mukherjee@kamalakshi
Kamalakshi Mukherjee commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4030 days ago

Applications of genetic algorithms in bioinformatics http://scholarworks.sjsu.edu/cgi/viewcontent.cgi?article=4491&context=etd_theses
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4031 days ago

Locality and Parallelism Optimization for Dynamic Programming Algorithm in Bioinformatics http://www.bioperf.org/TSF06.pdf
- Mukesh Jha@mukesh
Mukesh Jha commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4031 days ago

Pattern Recognition Algorithms http://www.eui.upm.es/~fmartin/webpgomez/Docencia/Pattern-Recognition/
- Mukesh Jha@mukesh
Mukesh Jha commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4031 days ago

A SURVEY OF SEQUENCE MATCHING AND ALIGNMENT ALGORITHMS https://people.ok.ubc.ca/rlawrenc/teaching/404/Project/Samples/Report/SequenceMatching_Report.pdf
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4032 days ago

One of my favourite lecture notes on "String Matching Problems and Bioinformatics" http://users.csc.calpoly.edu/~dekhtyar/448-Spring2013/lectures/lec03.448.pdf
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4032 days ago

Fast Dynamic Algorithm for Sequence Alignment based on Bioinformatics http://research.ijcaonline.org/volume37/number7/pxc3876636.pdf
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Bioinformatics Algorithm Demonstrations and Tutorials 4033 days ago

Hidden Markov Models in Bioinformatics http://www.benthamscience.com/cbio/Samples/cbio2-1/0005CBIO.pdf

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