<p><img src="http://genescf.kandurilab.org/pics/genescf_logo.png" border="0" alt="image" width="500" height="90," style="border: 0px;" /></p>
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<h1><strong>Gene Set Clustering based on Functional annotation</strong></h1>
<p>GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and <a href="http://ncg.kcl.ac.uk/ncg4/" target="new">NCG 4.0</a>). It requires gene list in the form of Entrez Gene ID (UIDs) or Official gene symbols as a input. GeneSCF supports more organisms from V1.1. Examples to download database as simple text file using GeneSCF "prepare_database" module, 1) https://www.biostars.org/p/197414/#197416 , 2) https://www.biostars.org/p/191532/#191540</p>
<p>The advantage of using GeneSCF over other enrichment tools is that, it performs enrichment analysis in real-time (v1.1 and above) by accessing source databases. With command-line versions of tools, as you know you can run multiple gene list simultaneously.</p>
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<td><br /><strong><em>Home page:</em></strong><br /><br />http://genescf.kandurilab.org/<br /><br /></td>
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<p><strong><em>Requirement:</em></strong></p>
<p><br />GeneSCF only works on Linux system, it has been successfully tested on Ubuntu, Mint and Cent OS. Other distributions of Linux might work as well.<br /><br /></p>
<p><br /><em><strong>Documentation:</strong></em><br /><br />http://genescf.kandurilab.org/documentation.php<br /><br /></p>
<p><br /><em><strong>Report issues </strong></em>on <a href="https://www.biostars.org/p/108669/" target="new"> Biostars</a> or <a href="https://github.com/santhilalsubhash/geneSCF" target="new">GitHub Project page</a></p>
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