miRNA database and tools
Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at transcriptional and post-transcription levels. Here are some important DBs and tools related with miRNA:
miRNA Sequencing data analysis : http://tools.genxpro.net/omiras/
miRNApath( R based tool) : http://www.bioconductor.org/packages/release/bioc/html/miRNApath.html
miRWalk DB : http://www.umm.uni-heidelberg.de/apps/zmf/mirwalk/
TargetScanHuman : http://www.targetscan.org/
RNAhybrid : http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/welcome.html
RNA22 predictor : http://cbcsrv.watson.ibm.com/rna22.html
miRNA predictor : http://www.microrna.org/microrna/home.do
Plant miRNA DB :http://bioinformatics.cau.edu.cn/PMRD/
miRBASE DB: http://www.mirbase.org/
Plant RNA predictor : http://plantgrn.noble.org/psRNATarget/
miRNA Interaction DB : http://starbase.sysu.edu.cn/
Sequencing based miRNA DB : http://mirgator.kobic.re.kr/
predicted A-to-I edited miRNA DB : http://microrna.osumc.edu/mireditar/
Animal, plant and virus miRNA DB : http://lemur.amu.edu.pl/share/php/mirnest/
Atlantic Salmon miRNAs DB : http://www.molgenv.com/ssa_mirnas_db_home.php
miRNA prediction on UTRs : http://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html
Idea of analysing miRNA Sequencing data :
http://www.illumina.com/applications/epigenetics/small_rna_analysis.ilmn
More:
http://www.bioconductor.org/help/search/index.html?q=miRNA+target
