Rahul Agarwal
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ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole...
By Rahul Nayak 2903 days agogithub.com - ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de novo assembled RNA-seq data with...Research Fellows at CSIR - Institute of Himalayan Bioresource Technology, Palampur, Himachal...
CSIR - Institute of Himalayan Bioresource Technology 2 vacancies of Project Fellow Name of the Post: Project Fellow No. of the Post: 02 Two Salary: Rs. 12000/- per month or Rs. 14000/- per month Age Limit: Max. 28 years as on 10.06.2015...PureCN: copy number calling and SNV classification using targeted short read sequencing
By Jit 2866 days agobioconductor.org - This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with...Big genomic data on Google Cloud Platform
By Reshma Khatun 4258 days agoAs the cost of DNA sequencing has dropped, the volume of data produced has risen into the petabytes. Google is working with the genomics community to define a standard API for working with big genomic data sets in the cloud. Building on Google Cloud...LoRMA: A tool for correcting sequencing errors in long reads
By Abhimanyu Singh 2838 days agogite.lirmm.fr - An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are...CLUSTER INNOVATION CENTER @ UNIVERSITY OF DELHI
Applications for Pre-selection of candidates under ‘Institutions Mode’ for DST-ISPIRE Faculty in Computational Biology/ Systems Biology/ Bioinformatics Applications are invited for pre-selection of candidates for Ministry of Science and...VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
By Rahul Nayak 2810 days agogithub.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...IPython: Interactive notebooks
By Rahul Nayak 4237 days agoThe IPython Notebook is a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single documentNanoPack: visualizing and processing long-read sequencing data
By Jit 2728 days agogithub.com - The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible...deepTools
By Martin Jones 4236 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
