Rahul Nayak
A Bioinformatician
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REU at Fordham University- Summer 2016 An NSF-funded REU to study Y-chromosome diversity and sex-biased dispersal in wild brown rats (Rattus norvegicus) is available in the Munshi-South Lab at Fordham University. Our lab is currently...Awesome bioinformatics pipelines !
By Jitendra Prajapati 3629 days agogithub.com - A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipelineTrimmomatic: A flexible read trimming tool for Illumina NGS data
By Jit 3613 days agowww.usadellab.org - Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10...Venn Diagrams on R Studio
By Jitendra Prajapati 3603 days ago Comments (2)rstudio-pubs-static.s3.amazonaws.com - First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <-...Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
By Jit 3602 days agobioinformatics.ua.pt - Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For...segemehl
By Anjana 3588 days agohoffmann.bioinf.uni-leipzig.de - segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is...
