Jit
Enthusiast computational biologist with business dream !!!
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miniasm: very fast OLC-based de novo assembler for noisy long reads
By Jit 2555 days agogithub.com - Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...Project Fellow at Institute of Himalayan Bioresource Technology
Research Associate/ Project FellowDate of posting:14 Aug Eligibility : MSc, M Phil / Phd, BE/B.Tech Location : Himachal Pradesh-other Job Category : Govt Jobs, Research, Walkin Last Date : 20 Aug 2014 Advertisement No.6/2014 Post :...
Run miniasm assembler on nanopore reads !
Last updated 2534 days ago by Jit Comments (5)Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...Biology, Computers Collide in High-Demand Field of Bioinformatics
By Manisha Mishra 3745 days agoDr. Shivas Amin calls bioinformatics a "collision of biology and computers." Students learn how to use computers and skills in math and biology to analyze genome and proteome projects to prepare for high-demand jobs in the life sciences. Learn more...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Jit 2397 days agogithub.com - Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After...A comprehensive atlas of human gene activity released !!!
By Abhimanyu Singh 3737 days agoA large international consortium of researchers has produced the first comprehensive, detailed map of the way genes work across the major cells and tissues of the human body.-
Frequent Paired-end reads (PE 2x100) mapping command lines
Last updated 2386 days ago by Jitbowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw... GenomeMapper: Simultaneous alignment of short reads against multiple genomes
By Jit 2376 days ago1001genomes.org - GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single...Research Scientist – Bioinformatics at Sidra Medical and Research Center
Sidra Medical and Research Center(Doha, Qatar) is looking for talented Research Scientists (Bioinformatics / NGS Data Analysis). Research Scientists within the Bioinformatics Program are involved in research related to cutting edge genomics and...
