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Phylogenomics/Phylogenetic website
By Aaryan Lokwani 3886 days agohttp://phylobabble.org/ - Welcome to phylobabble.org, a discussion forum for phylogenetic theory and applications. The primary goal of this forum is to discuss best practice and new developments in phylogenetics. Although we do have a Troubleshooting category for getting...CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and...
By Rahul Nayak 2379 days ago Comments (2)ecogenomics.github.io - CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous...BioCodes/BioScripts
By Jit 3870 days agogithub.com - Over the years most bioinformatics people amass a collection of small utility scripts which make their lives easier. Too often they are kept either in private repositories or as part of a public collection to which noone else can contribute. Biocode...shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
By BioStar 1423 days agogithub.com - Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take...RA at ALAGAPPA UNIVERSITY
DEPARTMENT OF BIOTECHNOLOGY (UGC SAP and DST-FIST & PURSE Sponsored Department) ALAGAPPA UNIVERSITY (A State University Accredited by NAAC with „A‟ Grade) Karaikudi - 630 004, India WALK IN INTERVIEW A walk-in Interview for the...ARCS: scaffolding genome drafts with linked reads
By Rahul Nayak 2456 days agogithub.com - ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft genomes into highly contiguous assemblies. We show how the contiguity of an ABySS H.sapiensgenome assembly can be increased over...Associate Professor - Bio-Informatics at University of Allahabad in Allahabad
No of vacancies: 01 Pay scale: Pay Band of Rs. 37400-67000 with AGP of Rs. 9000. i. Educational Qualification: Good academic record with a Ph.D. Degree in the concerned/allied/relevant disciplines. ii. A Master's Degree with at least 55%...
Frequent Paired-end reads (PE 2x100) mapping command lines
Last updated 2386 days ago by Jitbowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw...DNA Replication Process [3D Animation]
By Rahul Nayak 3853 days agoSee an organised list of all the animations: http://doctorprodigious.wordpress.com/hd-animations/
