Jit
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GroopM: Metagenomic binning toolset
By Jit 2820 days agogithub.com - GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use:...rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2255 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...Multigenome assembly
By Jit 2813 days agogithub.com - This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 1438 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...TMAP - torrent mapping alignment program General Notes
By Poonam Mahapatra 2794 days agogithub.com - TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest TMAP is unsupported. To use a...WGS Celera Assembler version 8.3rc2
By Jit 2786 days agowgs-assembler.sourceforge.net - These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms,...Selecting between Python 2 and Python 3?
Started by Rahul Agarwal 4156 days ago Replies (1) Last reply by Jitendra Narayan 4156 days agoWhich version is best for bioinformatician to work on?Metagenomics assembly workshop !!
By Jit 2778 days agodenbi-metagenomics-workshop.readthedocs.io - Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT...Research Fellow
UNIVERSITY OF CALCUTTA A walk-in-interview will be held on 15.7.2013 at 12 noon in the Department of Biophysics, Molecular Biology and Bioinformatics, 92 A.P.C Road, Kolkata-700 009 to select one trainee research fellow and two students under...List of GOI approved peer reviewed bioinformatics and computational biology journals
By Jit 2771 days ago Comments (1)Following are the list of Government of India validated and peer reviewed bioinformatics and computational biology journals:
