Jit
Enthusiast computational biologist with business dream !!!
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CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
By Jit 3362 days agowebchem.ncbr.muni.cz - Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutionized...Workshop On Molecular Modeling and Dynamics Simulation Analyses
Workshop On Molecular Modeling and Dynamics Simulation Analyses August1-2, 2014 Organised By Centre of Excellence in Bioinformatics Bioinformatics Infrastructure Facility Department of Biochemistry University of...Scripts for the analysis of HGT in genome sequence data.
By Jit 3234 days agogithub.com - Scripts for the analysis of HGT in genome sequence dataMany-to-many pairwise alignments of two sequence sets
By Poonam Mahapatra 3033 days agoemboss.sourceforge.net - needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two...Breaking chromosomes to study cancer !!!
By Jit 4465 days agoUsing RNA-Guided Endonuclease (RGEN) technology or CRISPR/Cas9 genome engineering technology, CNIO and CNIC researchers have shown that it is possible to obtain such chromosomal translocations.RA at IISER Kolkata Computational Biology/Bioinformatics
Applications are invited from suitable candidates for research associate (post-doc; Rs. 22000-32000)/research fellow (16000-18000)/project assistant (Rs. 10000-14000) positions in the Department of Biological Sciences, Indian Institute for Science...SDA: Long-read sequence and assembly of segmental duplications
By Jit 2774 days agowww.nature.com - Segmental Duplication Assembler (SDA; https://github.com/mvollger/SDA) constructs graphs in which paralogous sequence variants define the nodes and long-read sequences provide attraction and repulsion edges, enabling the partition and assembly of...You and your friend have similar DNA !!!
By Jit 4455 days agoYour friends may be as genetically similar to you as your fourth cousin ...Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
By Poonam Mahapatra 2599 days agowww.littlest.co.uk - Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents this similarity information graphically. Sequence similarity searching is a very general tool that forms the basis of many different biological...Protein function annotation and machine learning - UPMC - Paris, France
Protein function annotation and machine learning - UPMC - Paris, France Job Description: We are interested in finding an excellent postdoc with interests in protein functional annotation, machine learning and computer grids. The position is open...
