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Research Assistant @ University of Hyderabad
University of Hyderabad Repository for Tomato Genomic Resources Department of Plant Sciences Bioinformatics Position in Tomato Functional Genomics At the Repository for Tomato Genomics Resources, we are working on Tomato Functional Genomics,...
jobTree based python wrapper to run the genome simulation tool suite Evolver
By Jit 3164 days agogithub.com - evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation...BOKU Lab
We are interested in the study of complex systems in living organisms. Novel views augmenting the classical gene by gene approaches are required to overcome the engineered redundancies and combinatorial effects prevalent in higher eukaryotes. We...String graph based genome assembly software and tools !
By Rahul Nayak 3153 days agoIn graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". String graphs were first proposed by E. W. Myers in a 2005 publication.Postdoctoral Position (Bioinformatics/Computational Biology)
University College Cork LAPTI Cork-Co Cork-Ireland Postdoctoral position is available for three years to work on development of Bioinformatics resources for the analysis and visualization of ribosome profiling data. Ribosome profiling...MUMmer4: A fast and versatile genome alignment system
By Jit 3107 days agomummer4.github.io - MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing...Critical to discoveries in bioinformatics
By Surajeet 4617 days agoEMBL-EBI distributes datasets worldwide using the Janet network. This biological data enables the discovery of new drugs, new diagnostics and increasingly new agro-chemicals. Their work, which includes the 1000-genome project, has generated...AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
By Manisha Mishra 3034 days agogithub.com - AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa...Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Marikunnu P.O., Kozhikode – 673 012, Kerala WALK -IN- TEST CUM INTERVIEW Walk- in- Test cum Interview (based on test) for the selection of Research Associate...CrossMap: a program for convenient conversion of genome coordinates
By Jit 2990 days agocrossmap.sourceforge.net - CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly...
