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HASLR: a hybrid assembler which uses both second and third generation sequencing reads
By BioStar 2351 days agogithub.com - HASLR, a hybrid assembler which uses both second and third generation sequencing reads to efficiently generate accurate genome assemblies. Our experiments show that HASLR is not only the fastest assembler but also the one with the lowest number of...A Brief Bioinformatics Tutorial
By Jit 4525 days ago Comments (4)www.mrc-lmb.cam.ac.uk - This is about how to use a computer to find what is known about a gene of interest and also how to get new insights about it. The tutorial is divided in three main parts: In the Sequence part, you will see how to look efficiently for a...Svardal lab
In the Svardal lab they are interested how the astonishing natural diversity we see on earth came into being, by which forces it formed and how it is changing today. Hence, they are trying to understand the process of evolution, with mathematical...Bioinformatics JRF/SRF position at NII
NATIONAL INSTITUTE OF IMMUNOLOGY, NEW DELHI-110067 Applications are invited for the position of Senior Research Fellow for the following time-bound sponsored project as per the details given below: 1. BTIS project on, “Bioinformatics...HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly...
By Jit 1981 days agogithub.com - HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using...Bioinformatics JRF vacancy at ICGEB, New Delhi
Junior Research Fellow for a DBT sponsored project entitled "Computational and experimental characterization of stage specific arginine methylation in P. falciparum proteome". Candidates should have a 1st class MSc/MTech/BTech degree in...Josefa González Lab
Lab focus on understanding how organisms adapt to their environments. They combine omics approaches with detailed molecular and phenotypic analyses to get a comprehensive picture of adaptation. Our aim at being internationally recognized as a...
Linux Sort Commands for Bioinformatics
Last updated 4515 days ago by Rahul NayakAlmost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space efficiency GNU sort stands at the top. It can sort a 20Gb file with less...Illumina based assembly pipeline steps !
By Surabhi Chaudhary 1766 days agoGenome assembly pipeline !-
Next generation sequencing in R or bioconductor environment
Last updated 4513 days ago by John Parker Comments (3)There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It...
