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Short-read assembly using Spades !
Last updated 1649 days ago by Abhimanyu Singh Comments (2)If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the same Illumina data as we used above: illumina_R1.fastq.gz: the Illumina...Genomics and Personalized Medicine Breakthroughs
By Rahul Nayak 4449 days agohttp://bit.ly/e8QGzY Human genome mapping is now enabling a breakthrough in medical innovation -- personalized medicine. What does this mean for patients? We can now identify predispositions to disease, predict how we metabolize drugs, and figure...
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
By Neel 1624 days agogithub.com - This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA +...Assistant Professor in Bioinformatics at Dr. D. Y. Patil Biotechnology & Bioinformatics...
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Zhejiang University (ZJU) is seeking faculty candidates for its newly launched, highly competitive and well funded “Hundred Talents Program”. This search covers all colleges and departments at ZJU. Applicants, expected to be about 35 years old,...PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
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By Ram Yash Pal 4444 days ago Comments (1)Just press Ctrl+Alt+T on your keyboard to open Terminal. When it opens, run the command(s) below:Genetic basis of tail-loss evolution
By LEGE 521 days agoThe study suggests that a specific genetic mutation, involving the insertion of an Alu element (a type of transposable DNA sequence), played a critical role in the evolutionary transition from tailed primates to tailless hominoids.Genomic Medicine - Bruce Korf (2014)
By Neel 4427 days agoMay 21, 2014 - Current Topics in Genome Analysis 2014 A lecture series covering contemporary areas in genomics and bioinformatics. More: http://www.genome.gov/COURSE2014
