FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually:
minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta...
Applications are invited for the following Positions in the AiCADD project funded by MHRD Govt of India
Last Date for Submitting Application: 25th November 2013
1. Senior Scientist: (01 position)
Pay Scale: Rs.40, 000/-
Qualifications: PhD/...
gwct.github.io - Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site...
VECTOR CONTROL RESEARCH CENTRE
(Indian Council of Medical Research)
Indira Nagar Medical Complex
Puducherry-605006
WALK-IN-INTERVIEW
The following vacancies shall be filled purely on adhoc basis under Non-Institutional adhoc project...
github.com - jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants...
Roslin Bioinformatics Group
The Law group provides internal Institute-specific development, training and support roles for data manipulation, sequence analysis and any other aspect of the analysis of biological data using computer systems....
github.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...
Institution/Company:
University of Calgary
Location:
Calgary, AB
Job Description:
Novel diagnostic platform for detection of Osteoarthritis
I invite applications from highly motivated individuals to join my laboratory as a PhD student...
006 - Phylogenetics
Paul Andersen discusses the specifics of phylogenetics. The evolutionary relationships of organisms are discovered through both morphological and molecular data. A specific type of phylogenetic tree, the cladogram, is also...
Job Description: three postdoc positions in computational biology are available at the Center for Genomic Science in Milan (Italy):
- Development of computational methods to investigate the interplay between epigenetic and genetic layers and...