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pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2942 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2868 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...SAU Bioinformatics/Plant Biotech JRF Vacancy
Applications are invited for the post of Junior Research Fellow (JRF) to work on SERB, DST funded project entitled “Genome wide analysis of ascorbate oxidase multi-gene family and elucidating its role in negative regulation of stress response in...Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
By Shruti Paniwala 2788 days agowww.well.ox.ac.uk - Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect...Walk in interview for Research Associate, Studentship and Traineeship at BIF, NEHU, Tura Campus
BIOINFORMATICS INFRASTRUCTURE FACILITY (BIF) Department of RDAP North-Eastern Hil University, Tura Campus Tura-79402, Meghalaya Walk in interview for Research Associate, Studentship and Traineeship at BIF Applications are invited for the...Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
By Neel 2534 days agogithub.com - Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of...Assistant Professor at GAUHATI UNIVERSITY, GUWAHATI
Advt. No.T/2014/4 Ref. No. GU/Estt/T/308(VI)/2014/6451-61 Applications are invited from the Indian citizens for five (5) teaching posts of Assistant Professor (Contractual) under various departments of Gauhati University. Details of the...Scientist Bioinformatics Positions
Bioinformatics-Multi_Omics_Integration https://www.researchgate.net/job/939073_Senior_Scientist_Bioinformatics-Multi_Omics_Integration Senior_Scientist_Bioinformatics-Transcriptomics_Analysis...China University of Macau PhD Position 2015 in Bioinformatics, Computer Science
The Computational Biology and Bioinformatics Group at the University of Macau is inviting applications for PhD Position. Applicants will work on a research project focusing on the flexible receptor protein-ligand docking algorithms for...
