Jit
Enthusiast computational biologist with business dream !!!
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String graph based genome assembly software and tools !
By Rahul Nayak 2532 days agoIn graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". String graphs were first proposed by E. W. Myers in a 2005 publication.Yau Group
Yau Group are a new research group based at the Wellcome Trust Centre for Human Genetics and the Department of Statistics at the University of Oxford. Yau Group develops statistical and computational methods for the analysis of genomic datasets...MUMmer4: A fast and versatile genome alignment system
By Jit 2486 days agomummer4.github.io - MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing...Associate Professor - Centre for Bioinformatics at Maharshi Dayanand University, Rohtak
ADVERTISEMENT No. PR-54/2013 No. of Posts and Specialization: 1(UR) Educational Qualification: (i) Good academic record with a Ph.D. Degree in the concerned /allied /relevant disciplines. (ii) The Ph.D. Degree shall be a mandatory...AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
By Manisha Mishra 2413 days agogithub.com - AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa...NIT Calicut Faculty Jobs 2013 in Bioinformatics
NATIONAL INSTITUTE OF TECHNOLOGY CALICUT, KERALA NOTIFICATION FOR FACULTY RECRUITMENT – 2013 (Faculty openings in Technology, Science, Architecture and Management at NIT Calicut, Kerala) National Institute of Technology Calicut, Kerala,...CrossMap: a program for convenient conversion of genome coordinates
By Jit 2369 days agocrossmap.sourceforge.net - CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly...SRF/JRF @ National Institute of Immunology
ADVERTISEMENT OF WALK-IN-INTERVIEW NAME OF THE POST : SRF/JRF (Four Posts only) DURATION : Indicated with the respective project mentioned below: NAME OF THE PROJECT : As Mentioned below: 1. Serological diversity and molecular...assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference...
By Jit 2355 days agohttp://assemblytics.com/ - Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip...InCoB 2014
The 13th International Conference on Bioinformatics (InCoB 2014) will be held in Novotel Sydney Brighton Beach, Sydney, New South Wales, Australia. This year, the InCoB will be held earlier from 31st July to 2nd August 2014 to run back-to-back with...
