Biostatistics
Biostats materials ... Biostatistics is an innovative field that involves the design, analysis, and interpretation of data for studies in public health and medicine. Biostatistics experts arrive at conclusions about disease and health risks by evaluating and applying mathematical and statistical formulas to the factors that impact health.
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The Brent Lab
The Brent Lab is developing and applying computational methods for mapping gene regulation networks, modeling them quantitatively, and engineering new behaviors into them.
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
By Jit 2470 days agohttp://etetoolkit.org - ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and...
Bioinformatics OneLiner
Last updated 2420 days ago by Rahul NayakTo remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get average for a column of numbers (here the second column $2): awk '{ sum += $2; n++ } END { if (n > 0) print sum / n;...ASAR: Advanced metagenomic Sequence Analysis in R
By Jit 2330 days agogithub.com - An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is...-
Binding Site Prediction in Protein !
Last updated 2405 days ago by Poonam MahapatraThe interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the... LRSDAY: Long-read Sequencing Data Analysis for Yeasts
By Poonam Mahapatra 1917 days agogithub.com - Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and great biotechnological importance, the budding...-
Parallel Processing with Perl !
Last updated 2283 days ago by Rahul NayakHere is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is using perl threads and forks. Knowing how these threads and forks work is very important before implementing them. Getting to know... BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1435 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...Senior Bioinformatics Scientist at Elucidata
Key Responsibilities - Process and analyse metabolomic, transcriptional, genomics, proteomics and any other kind of biological data. - Interpret the data in the context of relevant biological literature to generate actionable insights. -...PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
By LEGE 277 days agogithub.com - What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies, mitochondrial genome assemblies, nuclear ribosomal DNAs...
