Biostatistics
Biostats materials ... Biostatistics is an innovative field that involves the design, analysis, and interpretation of data for studies in public health and medicine. Biostatistics experts arrive at conclusions about disease and health risks by evaluating and applying mathematical and statistical formulas to the factors that impact health.
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Tools for Searching Repeats And Palindromic Sequences
Last updated 2443 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later...
Cytoscape
By Anjana 3136 days agohttp://www.cytoscape.org/ - Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network...RA at UNIVERSITY OF HYDERABAD
UNIVERSITY OF HYDERABAD School of Life Sciences Department of Animal Biology Applications are invited on a plane paper (along with copies of educational qualifications and experience) from eligible candidates for the selection of following...HistoneDB 2.0 – with variants
By Anjana 3125 days agowww.ncbi.nlm.nih.gov - This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of...-
BBMap/BBTools package: Multipurpose tool designed for converting reads or other nucleotide data...
Last updated 2946 days ago by JitReformat is a member of the BBMap/BBTools package. It is a multipurpose tool designed for converting reads or other nucleotide data between different formats. It supports, and can inter-convert: fastq fasta fasta+qual sam scarf (an old Illumina... Blobsplorer
By Jit 3114 days agonematodes.org - Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for...CNIDARIA: fast, reference-free phylogenomic clustering
By Shruti Paniwala 3111 days agogithub.com - Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on prior knowledge, but these do not scale to arbitrarily large genomes...DarkHorse
By Jit 3106 days agodarkhorse.ucsd.edu - DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid...-
Cheatsheet for Linux !!
Last updated 3106 days ago by JitLinux Commands Cheat Sheet File System ls — list items in current directory ls -l — list items in current directory and show in long format to see perimissions, size, an modification... SAM flags
By Poonam Mahapatra 3098 days ago Comments (4)broadinstitute.github.io - Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would be for a given combination of properties. To decode a given SAM flag...
