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List of Bioinformatics Software Tools for Next Generation Sequencing
Last updated 3111 days ago by JitCommercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows “one can import the sample data in...Program Officer, Bioinformatics at Jhpiego
Jhpiego is a non-profit global health leader and Johns Hopkins University affiliate that is saving lives, improving health, and transforming futures. We partner with governments, health experts, and local communities to build the skills and systems...Easyfig
By Poonam Mahapatra 3130 days agoeasyfig.sourceforge.net - Easyfig has moved to github, for newer releases of Easyfig please visit our new webpage - https://mjsull.github.io/Easyfig. Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use...Research Fellow Bioinformatics
Research Fellow Bioinformatics Eligibility : BSc(Bio-Tech), MSc(Bio-Tech) Location : Ludhiana Last Date : 19 Apr 2016 Hiring Process : Walk - In Punjab Agricultural University Research Fellow Bioinformatics job opportunities in Punjab...RACA: Reference-Assisted Chromosome Assembly
By Priya Singh 3153 days ago Comments (1)bioen-compbio.bioen.illinois.edu - Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end...REAPR: a universal tool for genome assembly evaluation
By Jitendra Prajapati 3153 days ago Comments (1)genomebiology.biomedcentral.com - REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and...Trimmomatic: A flexible read trimming tool for Illumina NGS data
By Jit 3144 days agowww.usadellab.org - Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10...Research Associate Bioinformatics recruitment in National Bureau of Plant Genetic Resources
Name of Project : Indo-UK Centre for improvement of Nitrogen use efficiency in wheat Dr. Soma S. Marla, Pr. Scientist (Bioinformatics), Division of Genomic Resources, ICAR, NBPGR, ND. No. of Post : 01 Qualification : A doctoral (Ph.D)....HOMER: Software for motif discovery and next-gen sequencing analysis
By Neel 3133 days agohomer.salk.edu - This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such as HOMER. Setting up your computing environment Retrieving and storing...Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
By Jit 3133 days agobioinformatics.ua.pt - Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For...
