Abhimanyu Singh
A bioinformatics beginner
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Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2363 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...PhD position in biochemistry towards bioinformatics at the Department of Biochemistry and...
PhD position in biochemistry towards bioinformatics at the Department of Biochemistry and Biophysics. Reference number: SU FV-2293-13. Deadline for application: September 10, 2013. Project title: Functional Inference from Domain Architecture and...
Download blasr 1.3 version
By Jit 2332 days agoDOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './temporarySam' [bwa_aln_core] write to the...Senior Bioinformatics Programmer and SRF at BIOTECH PARK Lucknow
BIOTECH PARK Advt. No. 3 (8)/BP/13 A walk-in-interview will be held in the Biotech Park Office at Sector G, Jankipuram, Kursi Road, Lucknow (U.P.) August 27, 2013 at 11.00 a.m. for the following posts of DBT sponsored project tenable at...A Brief Introduction to Genetics
By Jitendra Narayan 4084 days agoA Brief Introduction to Genetics is a short documentary film that explores the history of genetics & genomics and the underlying concepts that provide the foundational knowledge that today's research is built upon. The film describes the history of...P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By BioStar 2248 days agowww.fishbrowser.org - P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...Tijana Milenkovic Lab
Complex networks and network mining: developing graph theoretic, mathematical, and computational algorithms for efficient extraction of function from topology of complex real-world networks, such as biological, social, and technological...Synima: a Synteny imaging tool for annotated genome assemblies
By Abhimanyu Singh 2195 days agogithub.com - Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included...NCBI PSI-BLAST Tutorial
By Jitendra Narayan 4077 days agohttp:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are...ANItools web: a web tool for fast genome comparison within multiple bacterial strains
By Jit 2180 days agohttp://ani.mypathogen.cn/ - ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identity (ANI), you could download and run this program directly. Or you...
