Abhimanyu Singh
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CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
By Rahul Nayak 3081 days agohttps://cblab.org/camsa/ - CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main features: works with any number of...RNA-Seq Analysis: A Guide for Bioinformaticians
By LEGE 545 days agoRNA-Seq analysis is a cornerstone of modern transcriptomics, offering bioinformaticians a versatile toolkit for unraveling gene expression and regulation. Mastering RNA-Seq workflows and tools empowers researchers to transform raw sequencing data...Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 3082 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.EGAD: Ultra-fast functional analysis of gene networks
By Rahul Nayak 2730 days agogithub.com - With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly efficient tools to calculate functional properties in networks based on the guilt-by-association principle. These allow rapid controlled...Troyanskaya Lab
The goal of our research is to interpret and distill this complexity through accurate analysis and modeling of molecular pathways, particularly those in which malfunctions lead to the manifestation of disease. We are inventing integrative methods...SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
By BioStar 2118 days agogithub.com - SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targeted metagenomics, statistical analysis and results visualization with a large...GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
By Neel 1478 days agogithub.com - The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL license. All source code and a containerized version of the GenomeQC pipeline is...SENIOR PROGRAMMER @ Biotech Park
Advt. No. (1)/BP/2014 A walk-in-interview will be held in the Biotech Park Office at Sector G, Jankipuram, Kursi Road, Lucknow (U.P.) January 31, 2014 at 11.00 A.M. for the following posts of DBT sponsored project tenable at Biotech Park....TelomereHunter
By Jit 3045 days agowww.dkfz.de - TelomereHunter is a tool for estimating telomere content from human whole-genome sequencing data. It is designed to take BAM files from a tumor and a matching control sample as input. However, it is also possible to run TelomereHunter with one input...Post-doc in Genomics of Fungi
Post-doc in Genomics of Fungi Fungi are of central importance for the global carbon cycle because of their role in the degredation of complex organic matter such as plant material. Fungi also represent one of the last frontiers...
