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P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By BioStar 2741 days agowww.fishbrowser.org - P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...Vvek's Lab
Broad Area of Research: RNA biology (microRNA, lncRNA), Stem cells, Functional genomics, Epigenomics and Cancer RNAs, especially non-coding RNAs (such as microRNA, long ncRNAs) are recently identified to be very abundant in mammalian organisms...Showreel 2008 - Cortical Studios
By Rahul Nayak 4531 days agoWe are a bioinformatics company that combines 3D animation, multimedia and scientific knowledge to meet your communication needs. With our academic background in the fields of biotechnology and molecular cellbiology and our computer expertise we...Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Marikunnu P.O., Kozhikode – 673 012, Kerala Phone No. 0495 2731 410 WALK -IN- TEST CUM INTERVIEW Walk- in- Test cum Interview (based on test) for the selection of...Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
By Rahul Nayak 2640 days agobitbucket.org - Some parts of a genome may have a very high degree of heterozygosity. This causes contigs for both haplotypes of that part of the genome to be assembled as separate primary contigs, rather than as a contig and an associated haplotig. This can be an...Experimental Scientific Officer (Bioinformatics)
Closing Date: 8 October 2013 Salary: £27,854 - £29,541, with progression to £36,298 You will perform cutting edge computational biology within the Faculty of Medical Sciences, with a particular focus on the Northern Institute for Cancer...LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
By Neel 2613 days agogithub.com - LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algorithm and extends them to long highly similar pairs. Then...Paolo Ruggerone Lab
Efflux pumps (RND family) Functioning of efflux systems in Gram-negative bacteria Determinants of the compound-efflux system interactions Action of inhibitors on efflux systems Structural and dynamical features of the efflux...Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
By Jit 2474 days agogenomearchitect.github.io - Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own...Bergman Lab
Broad area of research: Genome Annotation and Functional Genomics Bergman Lab is actively engaged in the development and application of computational methods to improve the annotation of functional biological features in genome sequences....
