Abhimanyu Singh
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MCAT: Motif Combining and Association Tool
By Neel 2612 days agogithub.com - This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C][-s S] [-d] [-ff] [-v V]positive_seq negative_seq positional...RA Bioinformatics at NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES
NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES Near Basant Vihar G.T. Road Bypass P.O. Box No.129 Karnal - 132001 (Haryana) WALK-IN-INTERVIEW A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal...HaploTypo: a variant-calling pipeline for phased genomes
By Jit 2272 days agogithub.com - An increasing number of phased (i.e. with resolved haplotypes) reference genomes are available. However, most genetic variant calling tools do not explicitly account for haplotype structure. Here, we present HaploTypo, a pipeline tailored to resolve...JRF Position – Bioinformatics Department, Aravind Medical Research Foundation (AMRF), Madurai.
Applications are invited from eligible candidates for the post of Junior Research Fellow (JRF) to work at the Department of Bioinformatics, Aravind Medical Research Foundation in the following DST-SERB funded project “Clinical exome analysis...SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
By Jit 2215 days agogithub.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:
Pattern Matching Problem Solution with Perl
Last updated 3926 days ago by JitProblem at http://rosalind.info/problems/1c/ #Find all occurrences of a pattern in a string.#Given: Strings Pattern and Genome.#Return: All starting positions in Genome where Pattern appears as a substring. Use 0-based indexing.use strict;use...PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
By BioStar 2034 days agogithub.com - PyParanoid is a pipeline for rapid identification of homologous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends...AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads
By Rahul Nayak 1821 days agogithub.com - AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...RA Bioinformatics at Institution: Centre for Human Genetics, Bangalore
Institution: Centre for Human Genetics, Bangalore Discipline: Molecular Genetics of Human Disease Biology Minimum qualification: MSc in any branch of life sciences Applications are invited for the position of a Research Assistant in the...
