Jit
Enthusiast computational biologist with business dream !!!
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FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
By Jit 2335 days agogithub.com - Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python...WGS Celera Assembler version 8.3rc2
By Jit 2832 days agowgs-assembler.sourceforge.net - These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms,...ChromHMM: Chromatin state discovery and characterization
By Abhimanyu Singh 2823 days agocompbio.mit.edu - ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial...Mapping NGS
By Abhimanyu Singh 2810 days agowiki.bits.vib.be - NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it represents...To know that you have to align the sequences to the reference sequence. The reference sequence is in most cases...Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
By Priya Singh 2802 days ago Comments (10)10 International Scholarships for Indian StudentsERGO 2.0 Bioinformatics suites
By Jit 2796 days agowww.igenbio.com - ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorithms, and the most comprehensive genomic database integrated with...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By BioJoker 2109 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...RA Bioinformatics at NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS, INDIA
NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS (An Autonomous Institution of the Government of India) P.O.: N.S.S., Kalyani 741251, West Bengal Advertisement No. 137/ESTB/NIBMG/17-18 Position available Project Description: Several positions are...StringTie Transcript assembly and quantification for RNA-Seq
By Jit 1676 days agoccb.jhu.edu - StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...Bioinformatics lectures !
By Jit 2599 days agorob-p.github.io - Computational Biology is a huge field of study, that touches upon many distinct algorithmic and biological areas of study. What we are able to cover in this course will depend, in part, on the pace at which we move, which I will attempt to...
